PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF029100010CFD_t1
Common NameTAA_ctg0005b.00100.1, TRAES_3BF029100010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 441aa    MW: 49460.3 Da    PI: 5.0231
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF029100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.51.1e-33131032101
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye++++++++ ++ w+ +g+sfvvl + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F 
  TRAES3BF029100010CFD_t1  13 FLTKTYEMVDEPATDAVVAWTPSGTSFVVLSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFI 89 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkk 101
                              +++++ l++i+r+k
  TRAES3BF029100010CFD_t1  90 RDQRHRLKNIHRRK 103
                              ************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.94E-339102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-599102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-201336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-205163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEGSGGSASL PPFLTKTYEM VDEPATDAVV AWTPSGTSFV VLSQADFCRD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPEQ WEFANEEFIR DQRHRLKNIH RRKPIFSHSS HTQGAGPLAD  120
SERRDYDEEI ERLKCDNASL KLQLERKKTD MESKMKALED KLFAIEDQQK NLISYVREIV  180
NAPGFFSSFV EQSDHQGKKR RLPKPISFHE DTSTQGNQIM HCDLVNSPTH ELFRASFDKM  240
ESSLNSLENF FKEASEAFGN DVSYDGDVPG HSSAVVLTEL HSSAESEPLH SSAESEPHEQ  300
SPPSMMHTCS AGVGDSHSSR DIAESASCPE SPPLPEAHSR ADSRAKVSEI DVNLEPAVTE  360
TGPSRDQQPT QDPPADANDG FWQQFLTEQP GLSHAHQEAQ SERRDREANQ TTAGDRGSFW  420
WGKSVEQMTE KLGHLTSAEK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-28310219129Heat shock factor protein 1
5d5v_B2e-28310219129Heat shock factor protein 1
5d5v_D2e-28310219129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644260.0FN564426.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569811.10.0PREDICTED: heat stress transcription factor A-4b-like
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLD8L9G20.0D8L9G2_WHEAT; Heat shock factor, putative, expressed
STRINGMLOC_74270.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-79HSF family protein
Publications ? help Back to Top
  1. Breen J, et al.
    Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain.
    BMC Plant Biol., 2010. 10: p. 99
    [PMID:20507562]
  2. Choulet F, et al.
    Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.
    Plant Cell, 2010. 22(6): p. 1686-701
    [PMID:20581307]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]